rs33087714 SNP Detail

Summary

• ID
  rs33087714
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148897296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACTCTATTT GTTAGGGCGC AGAAGACCAG TGGAAACCCT TCTATTCACA AGCCAAGGTC
  GTGTCCTACT TAAATGAGAA AAACGGTCCC TTGCTGTCTA CTGGGTCATG GTGCGTAGCT
  AATTTAATCT AGTTTGTAAA ATGCCTAGGA AAGTACAGAC TAGTCAGGTG ATGATTGAAA
  AGGATTCCTT TTGATCTCTT TGAGTCTAGC AAGCTCGGCA GCACTGGGCG GCAGGCAGCA
  AGGTCAGGGT AGCGAGCTTG CAGCAAGACT AGTATTTACA GGTTAGGTCT GCAGTCAGTG
  S
  ACCTCACCCC TCCCCACCCA TCCACCACAC CCCATTCCCT ATCCAGCACA CCCACCCACG
  CGCGCCCGCA TATACACACA CACACACACA CAGAAAAAAA AACCTCAAGA GGTGCTCTGT
  GGAGGAGACC CACAACTGAT GTGGTTGTGG GGGCACCTGT AGTCCTGGCT ACTGGAGAGG
  CTGAGGCCCC CTGAGGTACC TTGAGCCCAG GGGTTCCAGG TCAGACTGGG AGGCAGGGTT
  AGGGTTGGGG GGAAGAGATG GGGAAATGGG AGAGACGAAA GAAGGAAGGC ATATGGTATA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45736185	mCV22904390	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33087714					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148897296 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	770 bp distal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	1922 bp downstream
Rr111639	regulatory region 111639	1696 bp distal
Rr124806	regulatory region 124806	within coordinates
Rr378800	regulatory region 378800	within coordinates
Tssr49867	transcription start site region 49867	1218 bp downstream
Tssr49868	transcription start site region 49868	1146 bp downstream
Tssr49869	transcription start site region 49869	676 bp downstream
Tssr54596	transcription start site region 54596	1177 bp upstream
Tssr54597	transcription start site region 54597	997 bp upstream
Tssr54598	transcription start site region 54598	912 bp upstream
Tssr54599	transcription start site region 54599	485 bp upstream