rs33087994 SNP Detail

Summary

• ID
  rs33087994
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC TTCATGTTGT TGTAGATGGC
  K
  CGGCCTTCCT CCACGGCAGC CACGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254123	NES11563280	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33087994					SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254123	NES11563280	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047402 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	590 bp upstream
Tssr69023	transcription start site region 69023	316 bp downstream
Tssr74664	transcription start site region 74664	1642 bp upstream
Tssr74665	transcription start site region 74665	1316 bp upstream
Tssr74666	transcription start site region 74666	1257 bp upstream
Tssr74667	transcription start site region 74667	1229 bp upstream
Tssr74668	transcription start site region 74668	1026 bp upstream
Tssr74669	transcription start site region 74669	1012 bp upstream
Tssr74670	transcription start site region 74670	756 bp upstream
Tssr74671	transcription start site region 74671	735 bp upstream
Tssr74672	transcription start site region 74672	718 bp upstream
Tssr74673	transcription start site region 74673	579 bp upstream
Tssr74674	transcription start site region 74674	551 bp upstream
Tssr74675	transcription start site region 74675	537 bp upstream
Tssr74676	transcription start site region 74676	328 bp upstream
Tssr74677	transcription start site region 74677	285 bp upstream
Tssr74678	transcription start site region 74678	264 bp upstream
Tssr74679	transcription start site region 74679	244 bp upstream
Tssr74680	transcription start site region 74680	226 bp upstream
Tssr74681	transcription start site region 74681	200 bp upstream
Tssr74682	transcription start site region 74682	189 bp upstream
Tssr74683	transcription start site region 74683	3 bp downstream
Tssr74684	transcription start site region 74684	106 bp downstream
Tssr74685	transcription start site region 74685	132 bp downstream
Tssr74686	transcription start site region 74686	364 bp downstream
Tssr74687	transcription start site region 74687	418 bp downstream
Tssr74688	transcription start site region 74688	522 bp downstream
Tssr74689	transcription start site region 74689	591 bp downstream
Tssr74690	transcription start site region 74690	1012 bp downstream
Tssr74691	transcription start site region 74691	1055 bp downstream
Tssr74692	transcription start site region 74692	1922 bp downstream
Tssr74693	transcription start site region 74693	1948 bp downstream