rs33088219 SNP Detail

Summary

• ID
  rs33088219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192380474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTTCCT GACATTTCAC
  TGACTGGTTT AGAAACATGC AAAGGAAAGG GCATGGTGCT TTTTATAGCA TTGTGTTTGC
  AAACATTCTG TTAATTTTTG AACAGTCGTG TTTGCGCCTG TTTGATTGAC CCTCTGCCAC
  CACACTCGGG GTTCACAGAA GCCAAGCAAA TGGCACACCT GCTTCCTTCC CCTTGACCAA
  R
  AACTTAGCCT TCCCTCGGAA TATTTAGTCC AAGGCTTCAG GTCGAACTGA AGAGTTCTGC
  CAGATTCCCT TGGACATTCA ACTGGCAGGA AACCAACATT TGAATGTAAA TTGCAGAACT
  TTCCCTGCAA ATTAGAATAT ATAAACTGAA TAAGTTCTCA GCAAGTTCAA AACTACAGAA
  TCTGAATGTA TGTTAATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46770204	NES10644326	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33088219					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46770204	NES10644326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192380474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426377	regulatory region 426377			1222 bp distal