rs33088564 SNP Detail

Summary

• ID
  rs33088564
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126188204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTACTAT GCTAACCTCC
  ATGCCAGAGT TGGGGAACGT TGCCCAGGAA CTCCAAGCAC ATAGGAGTAG AGAGGGGTTC
  TGTGTGGCTG GAAGCTTCCC CCTCCCCCCA ACTCCATCCC AAACCGGCCT GTTCCTTGGG
  TGTCAGACCT TCCTGTGAAA AGATGTGGAA ACACAAACCG GGCTGGATGG CTTTATTAGG
  S
  ACCCAGCATG GTGGCCTAAC TCAAGAGTGA AACAATAAAT AAACCATTTC TTAAAAATAA
  ATAAATATCC AAGAAATAAA TATCTGGTAA GGACTGGAGG GCTTTTAAAT TATTGGGTCA
  GGGCTGGGAG CTAGTGAAGC CCTGCCTGGT CTAAGGCAAA CGAGCTAGAG CCTGTCCTGT
  GATTGGCCAG ACTCCAGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255424	NES11556920	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C	C	C	C	C	C	C	C	C	C	C
ss145874711	ENSMUSSNP4177293	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33088564					SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255424	NES11556920	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126188204 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Il27	interleukin 27	within coordinates
Tssr69041	transcription start site region 69041	363 bp upstream
Tssr74769	transcription start site region 74769	1495 bp upstream
Tssr74770	transcription start site region 74770	1461 bp upstream
Tssr74771	transcription start site region 74771	133 bp downstream
Tssr74772	transcription start site region 74772	206 bp downstream
Tssr74773	transcription start site region 74773	224 bp downstream
Tssr74774	transcription start site region 74774	267 bp downstream
Tssr74775	transcription start site region 74775	369 bp downstream
Tssr74776	transcription start site region 74776	376 bp downstream
Tssr74777	transcription start site region 74777	415 bp downstream
Tssr74778	transcription start site region 74778	788 bp downstream
Tssr74779	transcription start site region 74779	1024 bp downstream
Tssr74780	transcription start site region 74780	1221 bp downstream