rs33089519 SNP Detail

Summary

• ID
  rs33089519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126189694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCAAGT GCCAAGGAGC
  AGAGAAAAGG CGTCAGATAC CCTAGAACTG GAGTTACAGA TGGTTGTGAA ATGGTTGAGT
  TGCTGGGGAT TGGACCCAAG TCCTCGGGAA GAGCAGCCAG TGCTGTAAAC GACGGGACTT
  TCTCTCCAGC CCCCTTACCT GTCTGTCTGT CTGTCTGTCT ATCTATTTTT AAAAATGGTC
  R
  TGGTAGAGCA AGATGCTCCA AACTGGGTGG GACTGCTTTG CTCTGGGGAT CACTGGTCAG
  GAAATTCTCT GCTGTTAAGG ATTTTTCAGG ATCAGAGGGG GTGACACAGG TAGTTCCTGT
  TTTGCATTTT CAATTTTCTT TTTACTAAGG TAAAATTTCT ATTGCCCTTT GACCCGCCTC
  GGAGAATCCG AGTGAAGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255442	NES11556720	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33089519					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255442	NES11556720	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126189694 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	1410 bp downstream
Il27	interleukin 27	within coordinates
Tssr69041	transcription start site region 69041	1095 bp downstream
Tssr74771	transcription start site region 74771	1346 bp upstream
Tssr74772	transcription start site region 74772	1273 bp upstream
Tssr74773	transcription start site region 74773	1249 bp upstream
Tssr74774	transcription start site region 74774	1218 bp upstream
Tssr74775	transcription start site region 74775	1116 bp upstream
Tssr74776	transcription start site region 74776	1107 bp upstream
Tssr74777	transcription start site region 74777	1058 bp upstream
Tssr74778	transcription start site region 74778	677 bp upstream
Tssr74779	transcription start site region 74779	438 bp upstream
Tssr74780	transcription start site region 74780	266 bp upstream