rs33090645 SNP Detail

Summary

• ID
  rs33090645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGCAGAA AACAAACGCT
  ACAAACAAAT GAACACACCT GTCTGTCCTA GGGCAGGCAC CCAAAATATG GGCGCTGTCA
  TTTCTGAAGC CGGACACCCA GATGTATACT GCTGCAAGCA TGCTGCCCAG AGGTGGTGCT
  GTTTTAGGTT CTAAAGCTAA AAGCTGTACC ATGTGTCCCT CTCTACAAAG TCTGTGCTTC
  R
  GCCCTGCCCT GGTAAAATAA CAAGCAACTA ACAGATGTCA AAGCAATGAA TGATTTGGGC
  TAGGTAGGGT GGCTCACACT TTTAATATCA GCATTCAAGA GAGGCAGAGG CAGGCAGATC
  TCTATGAGTT CAAGGCCTGA CTTGTCTACA GAATTCCTGC ACAGACAAGG CTACAGAGTG
  AGATCCTATT TAAAAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255825	NES11555292	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33090645					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255825	NES11555292	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220203 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	668 bp upstream
Rr655535	regulatory region 655535	1172 bp distal
Rr655536	regulatory region 655536	429 bp proximal
Rr655537	regulatory region 655537	862 bp proximal
Rr655538	regulatory region 655538	1356 bp proximal
Tssr69045	transcription start site region 69045	1873 bp upstream