rs33090865 SNP Detail

Summary

• ID
  rs33090865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43921910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC TTCAGTTCCT GCCTCCTCCC
  R
  GCTCCTGTCG ATCTCGCCCT GCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39492788	mCV25199161	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145670884	ENSMUSSNP5517938	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325395825	CHEV_17_43747968	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33090865					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43921910 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527133	regulatory region 527133	547 bp proximal
Rr527134	regulatory region 527134	760 bp proximal
Tssr144713	transcription start site region 144713	245 bp upstream
Tssr144714	transcription start site region 144714	322 bp upstream
Tssr144715	transcription start site region 144715	858 bp upstream
Tssr148139	transcription start site region 148139	1008 bp downstream
Tssr148140	transcription start site region 148140	1066 bp downstream
Tssr148141	transcription start site region 148141	1114 bp downstream
Tssr148142	transcription start site region 148142	1163 bp downstream