rs33090876 SNP Detail

Summary

• ID
  rs33090876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134943144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACATGGCT TAAATCCATA GACACCTCTT TGTTTTCTTC
  TCACCTGAAC CTGAAATCTA ATCTAAGTCA CCAGAAAACA AAACGGAAAC AAACATTAAA
  W
  CACAAAAACA GCCTCATGCT GTCTGAAATA TCTGATTCCA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAGA AATGAATGTT GCCACTAAGT TGTCTAAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45236299	mCV22314034	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss147641100	ENSMUSSNP863349	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33090876					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134943144 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	153 bp proximal
Rr565721	regulatory region 565721	725 bp proximal