rs33091300 SNP Detail

Summary

• ID
  rs33091300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30066408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTTTGGA AAGCCAAGGT TCTGGATGCT TTTAAAAATG
  TGGGTCTTGT TTGAAGTCAG AGCCCTTACT TAATAAGCGA GGCACTAACT TGACAGGACA
  Y
  GTATGGTGGC GTGGAGGTCA GGACTGAGCT GGACGAGACA AGCTGCAGAG TCATCCTGGG
  AGGTGACTGC CACTACTTAA GTCCAGAAAG ATTTCGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39493626	mCV25001707	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss60556114	NES16574252	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	C	C	C	C	C	C	C
ss145436327	ENSMUSSNP5721749	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33091300					SNP	T	T	T	T	T	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556114	NES16574252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30066408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8930	CpG island 8930	1716 bp proximal
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	808 bp distal
Rr330463	regulatory region 330463	993 bp proximal
Rr341132	regulatory region 341132	608 bp distal
Rr341133	regulatory region 341133	1334 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1349 bp upstream
Tssr143596	transcription start site region 143596	899 bp downstream
Tssr143597	transcription start site region 143597	876 bp downstream
Tssr143598	transcription start site region 143598	786 bp upstream