rs33091670 SNP Detail

Summary

• ID
  rs33091670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93452965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAATTC CATGTACAAT
  ATATAAAACA TTATATATTT AACTAGGTCA TAATTATACT TAACATGATA TTCTTTGTAG
  AACTGCAAAG GCGTTATAAA TTTAGAATAA GTGGCAAATG TCCCTTGAGA GACATTCTTT
  TAGTAGTTCA AGCTTAAATG TGATAAGTAT TGCTATTCAT TTAATTGTTG TTGCATCTCA
  Y
  GATAAATTAA TTAAAGAAAG AAAACATGAA TATCTGTACA AATGCATTTT TAACAAAATA
  CAACAGAAAC ACTCATGCCA ATTATAATCT TTGTTTCTGC AACTAGTCAC ATGGCCTTAG
  CTAGTATTTA TAATTTCCTT TCTTTACTAC TCATTCTGTA TTTCCTCCAC TCTTGGCAAA
  CACCTCAGCA GGTCTTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45736342	mCV23358889	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148846998	ENSMUSSNP5657924	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33091670					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93452965 () rs orientation: forward

Symbol	Name	Function Class
Gm72287	predicted gene, 72287	within coordinates
Tssr51943	transcription start site region 51943	1320 bp downstream
Tssr51944	transcription start site region 51944	1332 bp downstream
Tssr51945	transcription start site region 51945	1344 bp downstream