rs33092446 SNP Detail

Summary

• ID
  rs33092446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126221838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGAATAGG CTAAGTGGGA
  GTGGTGATAC GGGTGCCTAG AATTTGAGGC TTAGAGGGCC ACTTGAGTTC AGGAGTTTGA
  GACCAGCCTC AAGAAAATGG ACTTGCCACC TGTGTTACTT AGGAGTATTT ACTCATAGAA
  CTTGTGTGTG AGAAAGAACA TTGTTTCGTC TGAGTAAAAT TGCAACATTC CAAACTCAGA
  Y
  CTCAGGCCAC TCTACACTTG GTTCAACCAT CTTCTCATTT GCTTCACATT TGCCTGGAAT
  TCTGGTCCTG AGACCCATCG GCCCACCATG CTTAGGGAGA GCTTTCTCAC CAGCTCACCA
  AGCACCCCAT CCTGGAAGCC AGCCTGGTAT TTCATGACTG AATTTGAGCC CTCGGTTGCT
  TAAAACAAAT CCTCTGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255849	NES11555204	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	T	C	C	C	C	C	C	C	C
ss145875128	ENSMUSSNP2443797	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33092446					SNP	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255849	NES11555204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126221838 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	580 bp downstream
Rr655536	regulatory region 655536	956 bp distal
Rr655537	regulatory region 655537	405 bp distal
Rr655538	regulatory region 655538	258 bp distal
Tssr69045	transcription start site region 69045	238 bp upstream
Tssr69046	transcription start site region 69046	579 bp upstream
Tssr69047	transcription start site region 69047	781 bp upstream