rs33092449 SNP Detail

Summary

• ID
  rs33092449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126222246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCAAGAAT ATGTAGGGGA CTGGCCACAG GTTGTCTCTG
  GGACAGCACT GCAAAGAAAC AAAGCAACTT CCCTGGAAGA AACCATAGAA ACAGGCTCCT
  Y
  AAAGCATCTG CATACATTAG AACAAGGCAA CAATCACGGA GAACCGTTCA AGCCCATATG
  CTACGCAATA AGGACGCTCC CTTTCCAGAT CAGCCTCCTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255852	NES11555206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33092449					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255852	NES11555206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126222246 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	172 bp downstream
Rr655536	regulatory region 655536	1364 bp distal
Rr655537	regulatory region 655537	813 bp distal
Rr655538	regulatory region 655538	666 bp distal
Tssr69045	transcription start site region 69045	169 bp downstream
Tssr69046	transcription start site region 69046	171 bp upstream
Tssr69047	transcription start site region 69047	373 bp upstream
Tssr74785	transcription start site region 74785	1974 bp downstream