rs33092451 SNP Detail

Summary

• ID
  rs33092451
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126222269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTCA TTTTGCAAAT
  GGTATTAACA GAAACATTCT CTTCCAAAAG CAGCTCTATA TAATAGGACC TCATGGTGCT
  CAAGAATATG TAGGGGACTG GCCACAGGTT GTCTCTGGGA CAGCACTGCA AAGAAACAAA
  GCAACTTCCC TGGAAGAAAC CATAGAAACA GGCTCCTCAA AGCATCTGCA TACATTAGAA
  S
  AAGGCAACAA TCACGGAGAA CCGTTCAAGC CCATATGCTA CGCAATAAGG ACGCTCCCTT
  TCCAGATCAG CCTCCTAGAG AGACACACAA TGGACACAGC CAGACACAAC ACACCCAAAC
  AAAACAAAGG CACACAACAC ACGCCAAAGC TGTCACTGCT GTACGATTTA TTGTTGCTGC
  CACCCAAGGG CATCCGATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255855	NES11555208	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C
ss145875159	ENSMUSSNP6598760	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33092451					SNP	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255855	NES11555208	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126222269 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	149 bp downstream
Rr655536	regulatory region 655536	1387 bp distal
Rr655537	regulatory region 655537	836 bp distal
Rr655538	regulatory region 655538	689 bp distal
Tssr69045	transcription start site region 69045	192 bp downstream
Tssr69046	transcription start site region 69046	148 bp upstream
Tssr69047	transcription start site region 69047	350 bp upstream
Tssr74785	transcription start site region 74785	1951 bp downstream