rs33092528 SNP Detail

Summary

• ID
  rs33092528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94903640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCATCACA AAAAAGAAAA GCAAAACCAG TCATCAAAGT
  GAGACCCCCA AGTGGAATCC TTCCTTTGAA GGCAGAGAGG AAATCTTGTT ATACATGCAG
  R
  TTCTGGAGTC ATACCCATTC TGAATCAATA TTGGAATAGA GGAATGAAGA ATACAAGGCT
  CTCTGCATTT TAACATGATC ACAAACTACC AAGTTAGCAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771052	NES10635154	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33092528					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771052	NES10635154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94903640 () rs orientation: forward

Symbol	Name	Function Class
A730011C13Rik	RIKEN cDNA A730011C13 gene	within coordinates
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr397834	regulatory region 397834	745 bp upstream
Rr580775	regulatory region 580775	657 bp proximal
Rr580776	regulatory region 580776	875 bp proximal
Tssr34411	transcription start site region 34411	768 bp downstream