rs33092530 SNP Detail

Summary

• ID
  rs33092530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94905283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAATAC TAGAATTACA
  GATGTGCATC AATGTACCTG GCTATACTAT GTTGAGACAT TGATCACCTG GGTTGGTGAC
  CTCAAAGAGG CTTCACCTAT TCAATCCAAT TCTCTATAAT ATTTGTAGGT TTTTTGAGGG
  ATAGAGGTAG CTTGAACTAA CTTTCTCTTG ATTTTGGTTT TGATTGTTTT TAGAAAGGAT
  Y
  TCACTTGTAG CCAAATGGAA CTTGCTTGTA CCCTCTCCAC CCTCAGCCAG TGTCACTACT
  ATTCTTGTGT TCATTACTGC TGCCTCAGCT TCCCAAATAC TAGGATTATA AGCAGTACTT
  TCATTTTGGT TTTGTTTGTT TTAAATATTG ATTTATATAT ATGTGTACAC TGTCACTGTC
  TTTCAGACAG ACAAGAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771055	NES10635101	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33092530					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771055	NES10635101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94905283 () rs orientation: forward

Symbol	Name	Function Class
A730011C13Rik	RIKEN cDNA A730011C13 gene	622 bp upstream
Gm15265	predicted gene 15265	828 bp downstream
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr397834	regulatory region 397834	597 bp downstream
Rr580775	regulatory region 580775	668 bp distal
Rr580776	regulatory region 580776	747 bp distal
Tssr34411	transcription start site region 34411	852 bp upstream