rs33092533 SNP Detail

Summary

• ID
  rs33092533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94905360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCAAAG AGGCTTCACC
  TATTCAATCC AATTCTCTAT AATATTTGTA GGTTTTTTGA GGGATAGAGG TAGCTTGAAC
  TAACTTTCTC TTGATTTTGG TTTTGATTGT TTTTAGAAAG GATCTCACTT GTAGCCAAAT
  GGAACTTGCT TGTACCCTCT CCACCCTCAG CCAGTGTCAC TACTATTCTT GTGTTCATTA
  Y
  TGCTGCCTCA GCTTCCCAAA TACTAGGATT ATAAGCAGTA CTTTCATTTT GGTTTTGTTT
  GTTTTAAATA TTGATTTATA TATATGTGTA CACTGTCACT GTCTTTCAGA CAGACAAGAA
  GAGGGCATCA GATCCTATTA CAGATGGTTG TGAGCCACCA TGTGGTTGCT GGGAATTGGA
  CCTTTGGAAG AGCAGTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771058	NES10635102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33092533					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771058	NES10635102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94905360 () rs orientation: forward

Symbol	Name	Function Class
A730011C13Rik	RIKEN cDNA A730011C13 gene	699 bp upstream
Gm15265	predicted gene 15265	751 bp downstream
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr397834	regulatory region 397834	674 bp downstream
Rr580775	regulatory region 580775	745 bp distal
Rr580776	regulatory region 580776	824 bp distal
Tssr34411	transcription start site region 34411	929 bp upstream