rs33092787 SNP Detail

Summary

• ID
  rs33092787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126186611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTATCA GGGCCGTGGA
  TACCGAGGAA GGGCCAAAAT GGGAAGCTGG GTTGGCTCCA GAAACAGAGC TTGGGAAAGC
  CTGGTGTTCC GAGGGCAGAG GGGAGGCTGG GAGAGGCACG GAGCTGGAGG AGACTACAGA
  GAAGCAAAGT GGACAGGAAG TTGGCTTGGT GGGCTCAGCA GAGAAGGTGT CTGGCTATGA
  Y
  ATCCAAGAAA TTGATGGGAC TGAAGAGGGG GAGCAGGCAG AGATGGAGAC ATCTGTAATG
  GCAGAAGACA TAAGGGGGAC GGATGGTGTG ACTTTAGGCT CCCAGGCAGA GAGAGCAGAG
  GGGTCCATAA CCCCCATGGA GACTGAGGGG CTCCTAAGAG ATCAGATGCT GTTGGAAGAA
  GAGGCTGGGG GAGGGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255382	NES11556903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33092787					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255382	NES11556903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126186611 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Cln3	CLN3 lysosomal/endosomal transmembrane protein, battenin	1620 bp upstream
Il27	interleukin 27	1571 bp downstream
Tssr69035	transcription start site region 69035	1890 bp downstream
Tssr69036	transcription start site region 69036	1818 bp downstream
Tssr69037	transcription start site region 69037	1552 bp downstream
Tssr69038	transcription start site region 69038	1515 bp downstream
Tssr69039	transcription start site region 69039	1496 bp downstream
Tssr69040	transcription start site region 69040	1271 bp downstream
Tssr69041	transcription start site region 69041	1956 bp upstream
Tssr74767	transcription start site region 74767	1848 bp upstream
Tssr74768	transcription start site region 74768	1599 bp upstream
Tssr74769	transcription start site region 74769	94 bp downstream
Tssr74770	transcription start site region 74770	120 bp downstream
Tssr74771	transcription start site region 74771	1726 bp downstream
Tssr74772	transcription start site region 74772	1799 bp downstream
Tssr74773	transcription start site region 74773	1817 bp downstream
Tssr74774	transcription start site region 74774	1860 bp downstream
Tssr74775	transcription start site region 74775	1962 bp downstream
Tssr74776	transcription start site region 74776	1969 bp downstream