rs33092790 SNP Detail

Summary

• ID
  rs33092790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126186824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCAGAGGG GTCCATAACC CCCATGGAGA CTGAGGGGCT
  CCTAAGAGAT CAGATGCTGT TGGAAGAAGA GGCTGGGGGA GGGCAGTCGC GAGAGCAGAA
  R
  GTCCACAACT CAGAGGGCGA GATCCAAACG CTGGACGACT CTTCAGACCA GGAGGGGCAG
  CAGACACACC AAATCCCCAC AGTAGCTGTG CCTGGGCCCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255385	NES11556904	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33092790					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255385	NES11556904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126186824 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Cln3	CLN3 lysosomal/endosomal transmembrane protein, battenin	1833 bp upstream
Il27	interleukin 27	1358 bp downstream
Tssr69037	transcription start site region 69037	1765 bp downstream
Tssr69038	transcription start site region 69038	1728 bp downstream
Tssr69039	transcription start site region 69039	1709 bp downstream
Tssr69040	transcription start site region 69040	1484 bp downstream
Tssr69041	transcription start site region 69041	1743 bp upstream
Tssr74768	transcription start site region 74768	1812 bp upstream
Tssr74769	transcription start site region 74769	115 bp upstream
Tssr74770	transcription start site region 74770	81 bp upstream
Tssr74771	transcription start site region 74771	1513 bp downstream
Tssr74772	transcription start site region 74772	1586 bp downstream
Tssr74773	transcription start site region 74773	1604 bp downstream
Tssr74774	transcription start site region 74774	1647 bp downstream
Tssr74775	transcription start site region 74775	1749 bp downstream
Tssr74776	transcription start site region 74776	1756 bp downstream
Tssr74777	transcription start site region 74777	1795 bp downstream