rs33092902 SNP Detail

Summary

• ID
  rs33092902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157121780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAGACTC ACAGGTCTGT CTGGGAGCTG AAAGCCTAGG
  GTATGAAGTG ATATTACGGG TGCAGACTTG TAACCGGCCA CGTATTGATT GTGAGAACAG
  R
  AGCCAGGGAC TCAACAGCTT AGTTTCTCAT CTGGTATCTG CTTCGCAAGA GTTGTGTTAA
  ATGATATTTC TGTGCTTGCT TTTAACAGTG CCGGGCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45236244	mCV22672030	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss148095661	ENSMUSSNP6304531	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
ss320585270	CHEV_2_157105596	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33092902					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157121780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12571	CpG island 12571			21 bp distal
Mroh8	maestro heat-like repeat family member 8			311 bp upstream
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr397441	regulatory region 397441			811 bp downstream
Rr568459	regulatory region 568459			704 bp distal
Rr568460	regulatory region 568460			within coordinates
Tssr21228	transcription start site region 21228			835 bp downstream
Tssr21229	transcription start site region 21229			796 bp downstream
Tssr21230	transcription start site region 21230			730 bp downstream
Tssr21231	transcription start site region 21231			543 bp downstream
Tssr27165	transcription start site region 27165			342 bp upstream
Tssr27166	transcription start site region 27166			305 bp upstream
Tssr27167	transcription start site region 27167			282 bp upstream