rs33092903 SNP Detail

Summary

• ID
  rs33092903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165439412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGCTAG CTGCTGTCGG
  GAGAGTGGAA AAGCCCACAG TAAAACGGGT CTGCGGCGTA GCCGGCCACT TTCAGAATTG
  GGTTGAATAC GCTGTGGAGA TTCTGGCAGT TTGAAAAACC TTATACACAG TCCAGGCACA
  TCCACTTAAG ATGTTTCCCC CACGACAATA TGACTCCATC CCACAAAGAA GAAATCATTT
  Y
  CTTATTTTTT TTTCAGCCTT TTTTCCCAAA GATAATTTGT GCCGGGAGTA GACCAGGACT
  AAGCAGCCAG CCGTCCAACT GTCACCAGCG CAAGCTGAGC TCAGGACGAG AACTCTTTCT
  CTGTCCCCAC CACCATCACC AGATGTGTGT TGGGTGTCCT CAGCTGCGAT GCCCCTTTGG
  AAACTCATTA AGCCAGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45236246	mCV23743224	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148241352	ENSMUSSNP2582643	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
ss320608380	CHEV_2_165422992	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33092903					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165439412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1657 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569956	regulatory region 569956	949 bp distal
Rr569959	regulatory region 569959	57 bp proximal
Tssr21728	transcription start site region 21728	1320 bp downstream