rs33093622 SNP Detail

Summary

• ID
  rs33093622
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85415584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC CCTTGACAGC TAAGATTCCT
  W
  TTTAACAGGT AAGGGAAATA GGAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46233264	mCV24193289	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss145392089	ENSMUSSNP2402990	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33093622					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85415584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	919 bp distal
Cpgi20706	CpG island 20706	526 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1056 bp upstream
Rr666573	regulatory region 666573	1064 bp distal
Rr666574	regulatory region 666574	1692 bp distal
Rr666575	regulatory region 666575	720 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	267 bp proximal
Rr666578	regulatory region 666578	837 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	314 bp upstream
Tssr78431	transcription start site region 78431	353 bp upstream
Tssr82111	transcription start site region 82111	1856 bp upstream
Tssr82112	transcription start site region 82112	1384 bp upstream
Tssr82113	transcription start site region 82113	1336 bp upstream
Tssr82114	transcription start site region 82114	1071 bp upstream
Tssr82115	transcription start site region 82115	1045 bp upstream