rs33094020 SNP Detail

Summary

• ID
  rs33094020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94890417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTACTGT GTGCCAGAGC
  TGTGTTAAGT CCTTTCATCC ACATCAGCTT GTTTTCTGTA CAGCAGCAAT GTGAAGTAAG
  GACTTTTTCC TCAGTTTGCA GCTGAGGAAG CCAAGAGAAA GATACATGAT GTGTTTACAT
  TTGTGTGGCT TGTAAGCATA GAGCATGGGT ATGGTGTTAG GAAACCAGAT GTGAAGAAGA
  Y
  GGGGCAGCTT CTGCAAGGTT GATGAAGGCT GGATGACTGT TTTAGAGATG CTTTCTACTA
  AGTGAAGCCT ACTATTGTAC TTGCTGGATC TTATTCCCTG GATTCTTTGA GTCTGAAAAG
  GAAAGTATCT ATAACCAAAG CATAGAGTGG TAGCTGGTGC CTGAAATTCC AGTACTTGGA
  AGGCTGAGGC AAGAGAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46770974	NES10635696	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33094020					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46770974	NES10635696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94890417 () rs orientation: forward

Symbol	Name	Function Class
D3Umi7	DNA segment, Chr 3, University of Michigan 7	877 bp proximal
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Tssr966	transcription start site region 966	1730 bp upstream