rs33094648 SNP Detail

Summary

• ID
  rs33094648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126187438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATCCTC TCTTCAGCTA
  GAGGAAACTC CAGAGCTAAG TGCCACAAAG CCCGAGGGGA CTCCAGTGCC AGCCAGAAGA
  AAAATGCTGG GGCGTGGGTA GGCACAGGGG CGCTATGCTT GGGATGGTGA GGAGGCTGCG
  GGAAGCTGGG GTCCACCTCC CAGAGCTCTT ATGGATCTGT TCCTTCTACA GGTTTGGCTT
  Y
  GCTCATCCTG GCATGATGCA GGAGCTGCAA GCCCGACTGA GCCAGCCAAA GCCACAGTGA
  CAGGGCCTAG AGCCCTAGAG AGAGAGACCT CCCAAGAGAG TCCGAAGGCT CTTCTGGACC
  CTGGTTACTC TTGAGTCCCT CGGCCACTGG AATATATCTT TTCACCCTCC CGGCCTCAGC
  TAAACTGGAT ATTTATGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255406	NES11556911	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33094648					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255406	NES11556911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126187438 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Il27	interleukin 27	744 bp downstream
Tssr69041	transcription start site region 69041	1129 bp upstream
Tssr74769	transcription start site region 74769	729 bp upstream
Tssr74770	transcription start site region 74770	695 bp upstream
Tssr74771	transcription start site region 74771	899 bp downstream
Tssr74772	transcription start site region 74772	972 bp downstream
Tssr74773	transcription start site region 74773	990 bp downstream
Tssr74774	transcription start site region 74774	1033 bp downstream
Tssr74775	transcription start site region 74775	1135 bp downstream
Tssr74776	transcription start site region 74776	1142 bp downstream
Tssr74777	transcription start site region 74777	1181 bp downstream
Tssr74778	transcription start site region 74778	1554 bp downstream
Tssr74779	transcription start site region 74779	1790 bp downstream
Tssr74780	transcription start site region 74780	1987 bp downstream