rs33094853 SNP Detail

Summary

• ID
  rs33094853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94945842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCAAAT TCTGTGTAGT
  TTTTCTTGTA TTCTCTACAC GGAGTTGCTT TGAGAATTAC ATGCATATAA AGCACTGAGC
  ATAGTACCTA ATACTTAGCA AAGGTGAACA CAGATTACAT GTATGATATC CTGGATTTGA
  TCATACAACA AAACAGGAAG CATTCCAGGA GAGTAGTTTA GTGGTGACCC AAACACACAT
  Y
  TGTAAACAAA CTATGTGAAG ATGCAGCTGA TCCACTGGCC ATGTCTCTAA GCTCCGCTTT
  CCTGAAACAG ATCCAACTTC TCTTCCAGGA GAGGTGTGGC AGCCTCTCAA ACTTCAAATA
  AAGCTGCGGG TCCATATATA AAACCAGAGG CTTCAAGCAC AGTTTGGATG GAACAGCTAC
  TAAGTGCAAG GACTGTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771244	NES10633307	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33094853					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771244	NES10633307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94945842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4			Intron
				Noncoding-Transcript-Variant
Rr580795	regulatory region 580795			1430 bp distal