rs33095405 SNP Detail

Summary

• ID
  rs33095405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192452446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTTGTCT TTCTGGGGTG CTGTCAAAAC AACACATCCA
  TCAGAACTGT CCTTAGCCAG CACATAAACC ATCCTACGGG GAGAGAAATC ACAGGGAAGT
  Y
  GGAACATGAA GAATAGAAGC CAGAAAGAAT GGACTTCTAG ACCCTGAGTG AAAGCGCACA
  GCCCTTCAAA GCTTTCCCTG AGCCGCGTCC TGTGGCACTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771089	NES10640750	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33095405					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771089	NES10640750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192452446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1234	CpG island 1234			340 bp proximal
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426393	regulatory region 426393			within coordinates
Rr426394	regulatory region 426394			439 bp proximal
Rr426395	regulatory region 426395			1065 bp proximal
Tssr15828	transcription start site region 15828			1061 bp downstream