rs33095427 SNP Detail

Summary

• ID
  rs33095427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126187849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGTCTG ATTAAGCCAG
  TGAGGAACCT GCTCCACTGG CATCGATCAT GGATTCCTTT CCCGGTGCCC TTTCACATCT
  GTCTCAGCTA CTCGGAAGGC TACCCGGAAG ACTGGGCTGG GGAAACTATT TTCCCCTAAA
  TTTCCCCAGT ATGCTCACCT GCCACCCAAT GTGAGATAAG ACCAGCAAGT GTAAGTGTGC
  K
  TGCGTGTAAG ATAGCACACT TCTGGGGTGG AAACCAGCCC AAAGGAAAGA GGTTCAAGGG
  GCTGAGCAAG GGACACCACT TGGAGTCCAC GGCCACCGGC AACAGATCAG TTGCTTTGAG
  TTTCCAAAAT GACGGCTCGG TATCACAGCT CTGCAGGTTA CTATGCTAAC CTCCATGCCA
  GAGTTGGGGA ACGTTGCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47255415	NES11556915	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	G	T	T	T	T	T	T	T	T
ss145874689	ENSMUSSNP5980013	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33095427					SNP	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255415	NES11556915	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126187849 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Il27	interleukin 27	333 bp downstream
Tssr69041	transcription start site region 69041	718 bp upstream
Tssr74769	transcription start site region 74769	1140 bp upstream
Tssr74770	transcription start site region 74770	1106 bp upstream
Tssr74771	transcription start site region 74771	488 bp downstream
Tssr74772	transcription start site region 74772	561 bp downstream
Tssr74773	transcription start site region 74773	579 bp downstream
Tssr74774	transcription start site region 74774	622 bp downstream
Tssr74775	transcription start site region 74775	724 bp downstream
Tssr74776	transcription start site region 74776	731 bp downstream
Tssr74777	transcription start site region 74777	770 bp downstream
Tssr74778	transcription start site region 74778	1143 bp downstream
Tssr74779	transcription start site region 74779	1379 bp downstream
Tssr74780	transcription start site region 74780	1576 bp downstream