rs33096510 SNP Detail

Summary

• ID
  rs33096510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96085516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTGTCCA CTGTATTGCT
  TGCTGTCATG GCTACTGAAG AGTTTGGATA CTTTCTGTCA AATTCCTGTT ATTTCTTGAG
  AAAAAATTCA GAGGCATCCT TCTCTGTAGT TGAGTATTAC CACTTAACTG ATCCACAGGA
  CCATTTAATA TGATGAGCTT TTAAAAATTG AAAATATTCT CAAGTATAAA AAAACCATAA
  Y
  ACCTTACTTT AAATCATAGG GTTTCTTCAC TGGTTATTTG TCCAATGAAG CTTATAAGTT
  TAAAAAGTAT TCATTAATTC ACTACTAATA CTATAAACAT CTGGCCAGAA TTTTATAAAA
  AGCTTATTCA TGCGCACAGT TTTAATATTC TCCCTTTTCA GAATAAAATT TATATCTAGA
  AACATATACA AATACATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49442667	NES12830827	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33096510					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49442667	NES12830827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96085516 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	within coordinates
Rr371742	regulatory region 371742	539 bp downstream