rs33096684 SNP Detail

Summary

• ID
  rs33096684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126266214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCTGTGT GTGTTTGTTT
  TCCCTTTTGT AGTACATACT ACACAAGCTC TGTATCATTG AGTCACATCC CCAGGTCTTC
  ATCTGAGAGT AAAAAGCAAG CTGCCCCTTC CTCTCCTGAC TGCTGGCAGA GTGAAGACTC
  ACACAGGAGT TTGGTATGAA ATGCCTGTCA TGACTTACCC AACATTCAGC ACTTAGAAGG
  Y
  GGTTAGGTAA ACATGGGCCT ACCTTGAAGT CTTTTTGCTA ATTCAGGCTT TTAGGCTCTT
  AAACAATATC TAAACACTCC CAACCTAGCA GCTGGAAGAG AGAAAGCAAA AGAGATGAGG
  CAGCCAGGTC CAACTACTCT CAAACTAGGT CAGACAAACT CATGCCACTG GGTGATATGT
  AGTCAACACC ATACTGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47256164	NES11552448	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33096684					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47256164	NES11552448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126266214 () rs orientation: forward

Symbol	Name	Function Class
D930031A20Rik	RIKEN cDNA D930031A20 gene	916 bp upstream
Rr381448	regulatory region 381448	within coordinates
Sgf29	SAGA complex associated factor 29	within coordinates