rs33097716 SNP Detail

Summary

• ID
  rs33097716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:32352821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCTATC TATCTATCTA
  TCTATCTATC TATCTATTTC AATCAAGATT AAGAAAGCCA TTGTAGCAGT TTTGCTTCTT
  GTCTCTGTCC TGTGTATAAC TTTTCCCCAA TGTTTATGTG GCATGTATAA AACTCTAAAA
  CTGAGTTGCA AAACTCAGGT GTGATGCTAA TGTCCACACT CTGGTCTCGT TACTCATCTA
  Y
  GTTGTCAGTC AATGGTGGAC TTCAGGTGAT GGTTTGGACA CATATCCTTG TGCTCCCAGG
  AGGCTGAATC TCTTAAGGGG AGCACAGCTC AGCATTGTTA TCTCCTCTGC TGTTTCTTGA
  ATATAAAAGC ATACAGGATA CAGGTTACTA GCTGAGAAAT AGGTGATGAC TTGCTTATAC
  TAGAGGGAGC ACTGGATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49442676	NES12613792	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33097716					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49442676	NES12613792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:32352821 () rs orientation: forward

Symbol	Name	Function Class
Rr313079	regulatory region 313079	381 bp proximal
Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	within coordinates