rs33097718 SNP Detail

Summary

• ID
  rs33097718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96082459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCTTTAT TTACATATTT TTTCCACCTT TCAATTGGGA
  TAAAATAAGT AAAAATTTTA TGCCAATAAT TGGTCAATGC AGGTATTTGT AAAGACTCAG
  Y
  CAGAAAAACA TCTTACTTTA TGATTGGTAG CTATCAACAC TGTATTTGTA CAATAGAGAC
  TTAAAATAAA TTATAATCTT TTATATGAGC AAAATTATAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49442679	NES12831136	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33097718					SNP	T	C	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49442679	NES12831136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96082459 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	1266 bp downstream
Rr371742	regulatory region 371742	1570 bp upstream