TAACTCATTG TCATTGCTTC ATTCTTTTTG ATTGTTTAAC TTTTAAAAAT CATATGGCTT TTTAAAATGA TGGCTTTTCC TATTTCTTTT TGCTCATTAG TTTTATCATT TAAAATATAA GTTTATTTTA ATGGTATCAA TTTTTTTTTT CTTTATAGTT TCTTTAGTCA CTGCTTAGAA AATTTGAGAT TTAGTTTTAC Y TTTTTTCTGA TGTAATTAAA GATTTTCCTG TTTTGATCCA GGAGGCAGGT ATTTAAAGTA GATGACGCTC TTCTTATCTC GTTCATCTTA TTTTTAAAAG AAGATTTTAT TGTATTATTT TAAGTGATGC ATATCTGTGT GGGTTTATGT GTGAATATGT GTGTATGCAT GAATGTAGGT GTCTGCAGAG GCCAGAGATG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49442680 | NES12613887 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33097719 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49442680 | NES12613887 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr15:32351915 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr313079 | regulatory region 313079 | 1287 bp proximal | ||||||
Sema5a | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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