rs33097720 SNP Detail

Summary

• ID
  rs33097720
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96082044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAACAGCT TGGCAGCATG AAATTTTATC
  CTTGTATATA GTTATATTTT CACTTTTTAG AGAATTCTAC TTATTTTACC AATGATCTTT
  CTAATTTTTT TAACATTAAG AGCAGACAAC TGAGATTCCC AATGCATAAA GAGAACTGTG
  M
  ATATATAATA ACATTCCGCA TTGGAGAAAT AGTCCCCTAA GACCAAAAAA GAACATTTCT
  AATGTCATAA CCAGACATTC TTTTTGTAAT ATTATAAGAC AAATTAGCAT ATCTTTACCA
  TCTACTCTTT TTTCCATTCT GTGTTTCTGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49442681	NES12831132	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	C	C	A	C	A		A	C		A
ss144978454	ENSMUSSNP3205760	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss319850680	CHEV_1_98050896	CHEVERUD	SCREENING_POP	f	SNP											C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33097720					SNP	A	A	C	A	C	C	C	A	C	A	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49442681	NES12831132	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96082044 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	1681 bp downstream
Rr371742	regulatory region 371742	1985 bp upstream