rs33098096 SNP Detail

Summary

• ID
  rs33098096
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:82271428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG TGCACAGGGG CAGCACAAAT
  M
  CAACCTCTGT AGGGCTGTGT TCTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45737310	mCV24340405	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss148747182	ENSMUSSNP3266065	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33098096					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82271428 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	Intron
Tssr51487	transcription start site region 51487	234 bp upstream
Tssr51488	transcription start site region 51488	208 bp upstream
Tssr51489	transcription start site region 51489	1066 bp downstream
Tssr51490	transcription start site region 51490	1080 bp downstream
Tssr51491	transcription start site region 51491	1110 bp downstream
Tssr51492	transcription start site region 51492	1121 bp downstream
Tssr51493	transcription start site region 51493	1147 bp downstream