rs33098419 SNP Detail

Summary

• ID
  rs33098419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126268472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGAGCA ATTGCCTAGC
  TTGCAAGTGG CCCTTGTTTT GATCCCTAGT ACTGAAAAAA AAAATGTAGT CATTGGTTAG
  TTAACATTCT GAGACTTGTC ATTGATGAAT CCCATGGTGT GACTATCACT GGGCATTGAC
  ATAAACTTTG ATTTATTGAC ACTCACTGTG GCCTCTTACA CAATAAAAAC ATTCTGAGAA
  Y
  GTGAGATGTG TGAATATGAG ATGTGTGTCA CAGTTATTTC TATAATCCAG TGTGATTGTA
  TATGACTGTA CATGCCCTGC TTGAATATGA CTGTTTGTGT AGAGCATGTA ACATGTTACA
  CCATGACATT AAACTGTCTG TTGTAGAAAT TTTTAATTCC AGTCTGAGGT TTCTACCCTG
  CCCTTGACCA TTTAGTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47256191	NES11552241	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33098419					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47256191	NES11552241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126268472 () rs orientation: forward

Symbol	Name	Function Class
D930031A20Rik	RIKEN cDNA D930031A20 gene	147 bp downstream
Rr381448	regulatory region 381448	921 bp downstream
Sgf29	SAGA complex associated factor 29	within coordinates