rs33098482 SNP Detail

Summary

• ID
  rs33098482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33855666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGCCTTG GCTGTCCTGG AACTCACTTT GTAGACCAGG
  CTGGCCTCGA ACTCGAAATC CGCCTGCCTC TGCCTCCCAA GTGCTGGAAT TAAAGGCGTG
  Y
  GCCACCACTG CCCGGCTTCA TTGTATTTTT ACAAGGCACT GCAACAATAG CCTTAAACTA
  CCAGACTTTC CAATCCTCCT GCTTTTAACT CCCAAGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39494440	mCV24098508	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145493299	ENSMUSSNP4648618	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325366931	CHEV_17_33773637	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33098482					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33855666 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	1364 bp upstream
Tssr143785	transcription start site region 143785	1108 bp upstream
Tssr143786	transcription start site region 143786	1129 bp upstream
Tssr143787	transcription start site region 143787	1397 bp upstream
Tssr143788	transcription start site region 143788	1428 bp upstream
Tssr143789	transcription start site region 143789	1438 bp upstream