rs33098850 SNP Detail

Summary

• ID
  rs33098850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84626144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGATCC AGATACTGCT TTTACCTGCC GGCTCTGTTG
  CAGCCAGCGC GCGGGATCCT TCCATACCTC AGTCCAGCCC TCATTTTGTC CCTCCCCACC
  S
  CACGTCGCTG TTAGGAAGAT GGGGGACAGC CTACGCTCTT GTCAGTCACT AAGCAGCACT
  CCCTCCGGCC CTCCTGCAAT CCCGGGTGGG AGACGCTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46234594	mCV24180768	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss145367063	ENSMUSSNP5415622	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss322746689	CHEV_8_86423414	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33098850					SNP	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84626144 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	590 bp upstream
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	within coordinates
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	443 bp upstream
Tssr78301	transcription start site region 78301	573 bp upstream
Tssr78302	transcription start site region 78302	581 bp upstream
Tssr78303	transcription start site region 78303	599 bp upstream
Tssr78304	transcription start site region 78304	932 bp upstream
Tssr78305	transcription start site region 78305	1077 bp upstream
Tssr78306	transcription start site region 78306	1105 bp upstream
Tssr78307	transcription start site region 78307	1191 bp upstream