rs33098938 SNP Detail

Summary

• ID
  rs33098938
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104179016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTCAAGTT GACATGAATC TAGCCTGCAC AGTGGAAAGG
  AAAGAGCTGG AATGACCAAC TCTAAAATTT GATGTTGAAT GTGGTGGATA ACTGGAGCCA
  K
  CAGAATTCAG CAGAAACACC CAGGAGTCTC AAAAGTGACA CTTAAGTTAG GGTGGATAGG
  ACCGTGTGAA AAGTGCCCAG TGTTCTTTCC CTGGTTTCAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47257131	NES11407138	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	T	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33098938					SNP	G	G	T	T	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47257131	NES11407138	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104179016 () rs orientation: forward

Symbol	Name	Function Class
Serpina3f	serine (or cysteine) peptidase inhibitor, clade A, member 3F	1787 bp upstream
Tssr114833	transcription start site region 114833	1755 bp upstream
Tssr114834	transcription start site region 114834	1781 bp upstream