rs33098950 SNP Detail

Summary

• ID
  rs33098950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95013809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCATCAAGG GATGAAAACC CGGCCGCCGC TGGCCCTGAG
  GAGGCGGACG CCATCTTGGC AGCCCCCTCC CCCTCAGCGG CTTCGCTCCC TTTCAATCCG
  R
  CTTTTCCTTT TCTCGGAATC GAATCTTCCC CACGTCTCTT CACAGAACCC GCGTTCGGCG
  GGCTTCTCAC AGGCGTTGTT CAGGCTCCAG GACAAGCTCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771553	NES10668040	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33098950					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771553	NES10668040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95013809 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13496	CpG island 13496			within coordinates
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			mRNA-UTR
				Noncoding-Transcript-Variant
Rr367478	regulatory region 367478			within coordinates
Rr580812	regulatory region 580812			within coordinates
Rr580813	regulatory region 580813			271 bp proximal
Rr580814	regulatory region 580814			1131 bp proximal
Rr580815	regulatory region 580815			1604 bp proximal
Tssr34417	transcription start site region 34417			320 bp downstream
Tssr34418	transcription start site region 34418			409 bp downstream