rs33098953 SNP Detail

Summary

• ID
  rs33098953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95015289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTAGCA GCTGTGAATA
  TTATGGGAAG CCTAGGGAAG GCCTTTTTGA ACAAGCGCTT CTGAAAAGCA AAGACTGTGT
  GCTAAAGTTC TATGTCCACC TCCTGTCACA TTTTTGTACA AGGTAATCAC TCAATAATTA
  TTTGTGAAAT GAATAAATAA AAGGCATGGG AAAAAACCTC CAGCTTATTG GTTCTAAAGT
  K
  GCCTGGACAC CTATCCAGAT GTTCCTCCAA AGGGAACCCA GGGCCAGAGT ATCCATCAAA
  TATCTCCCAT TCCTTAACCT CAGATTTCTT CCTCTGCCTT CAAGACCTAA AATATTTGTT
  TCCTTACTGC CATCTGCTGG ATTCTTTGTG CTCCCTTGGG TACTAAAGAT TGACAAACTT
  CATTTGATAG AATTAGCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771556	NES10667961	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33098953					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771556	NES10667961	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95015289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	867 bp distal
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	1048 bp upstream
Rr367478	regulatory region 367478	118 bp downstream
Rr580812	regulatory region 580812	1210 bp distal
Rr580813	regulatory region 580813	558 bp distal
Rr580814	regulatory region 580814	328 bp distal
Rr580815	regulatory region 580815	124 bp proximal
Tssr34417	transcription start site region 34417	1081 bp upstream
Tssr34418	transcription start site region 34418	1056 bp upstream