rs33099039 SNP Detail

Summary

• ID
  rs33099039
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30573772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CAGCTCAGTC ACAGGCTTGC
  K
  AGTAGAAAGC TACATTGTAT GCTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39493790	mCV22744566	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					G		G
ss48361369	NES12236170	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T	T		G	G	T	G	G	G	T	T
ss145441906	ENSMUSSNP5381556	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33099039					SNP	G	G	T	T	G	T	T	G	G	G	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48361369	NES12236170	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30573772 () rs orientation: forward

Symbol	Name	Function Class
Btbd9	BTB domain containing 9	within coordinates
D17Mit60	DNA segment, Chr 17, Massachusetts Institute of Technology 60	1324 bp proximal