rs33099367 SNP Detail

Summary

• ID
  rs33099367
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115079468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGTTCTAAT AGAAAACAAT CAAAAGGTGT ATTAATCTGA TATGTATTAA GGAGTGACAT
  TAAAAAAAAG TCTTCGTTTT CTGCAATTAA ACAGTTGTGT TTCATAAGAG CAGAAAACTT
  TGTGTAGGGC TGGAGAGATG GTTCAGAGGT TAAGAGAACT GACTGCTTTT CCAGAGGTCC
  TGAGTTCAAT TCCAGGAACC ACATGGTGGC TCACAACCAT CTGTATTGGG ATCTGGCGCC
  CTCTTCTGGT GTGTCTGAAG ACAGCTACAG TATTCATTCA TATACATAAA ATAAATCTTA
  W
  AAAAAATGTT GCCTGGTAGT GGTGGTGTAC ACCTTTAATC CCAGCACTTG GGTGGCAGAG
  GCAGTCGGAT TTCTGAGTTC AAGGCCAGCC TGGTCTACAA AGTGAGTTCC AGGACAGCCA
  GGGATATACA GAGAAACTCT GTCTCGGGAA AAAAACAAAA ACAAAAAACA AAAAAAAAAA
  AACAAAACAC ACACACACAC ACACAAAAGC TCTCAAGTGC TAGTCTACAG GTGTTTTACG
  GACTATGCAC TAACTGCTAA ATCCTCCGCT GTTCCAAGAG TCATTCCGAT CTGATTTGTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45737489	mCV25153016	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33099367					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115079468 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	745 bp upstream
Cpgi16342	CpG island 16342	648 bp proximal
Rr399277	regulatory region 399277	639 bp upstream
Rr618069	regulatory region 618069	47 bp distal
Rr618070	regulatory region 618070	296 bp proximal
Rr618071	regulatory region 618071	773 bp proximal
Tssr48192	transcription start site region 48192	767 bp upstream
Tssr48193	transcription start site region 48193	807 bp upstream