rs33099401 SNP Detail

Summary

• ID
  rs33099401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95032089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGAGGT GACCATTGGG
  ACTGGTAGGT GGGAACAAGG GGTCTTACGG GTGAGAGCCT GGTGGGAGAT GGCAGAGTGG
  GCCTAGGGGA AGAGAGTTGG CATGTCTCTG CTGTGTCCTG CCGCCGATGT TTCTGTCTTG
  ACTCTGTAGC TGCCTTGTCA GTGCCTCACG CTCAGTATCA CCTTCCATGT TGAGTGTGGT
  R
  TGTATTTAGA GCTTGACTGT TTTTCCCACT GAAAGGTGGT GCAAGTTTAT CATCCCACCT
  CCTCATTTAG AAGACTTTTT TTTCTTCTTC TTCTTCTTTT ACCCAGGGTT CCAGTGTCAC
  CTTTCTGGTG ACAGATTATG GGAACCGAAT GCCTTCTGAG GCCACACTGC CCTTCCCCCA
  ATCTGGAAGT GCCCCAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771736	NES10667107	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33099401					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771736	NES10667107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95032089 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580819	regulatory region 580819			253 bp distal
Rr580820	regulatory region 580820			within coordinates
Tmod4	tropomodulin 4			Intron
				mRNA-UTR
Tssr967	transcription start site region 967			329 bp downstream
Tssr30491	transcription start site region 30491			313 bp downstream
Tssr30492	transcription start site region 30492			218 bp downstream
Tssr30493	transcription start site region 30493			1411 bp upstream
Tssr30494	transcription start site region 30494			1428 bp upstream
Tssr30495	transcription start site region 30495			1440 bp upstream
Tssr30496	transcription start site region 30496			1462 bp upstream
Vps72	vacuolar protein sorting 72			1727 bp downstream