rs33099573 SNP Detail

Summary

• ID
  rs33099573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47746468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTAGATTTA AAGGGGGGCG GGGAGGGATG ATGAAGAGGA GAAAGGGATG GGAGGGAAGA
  GTGGGAGAGG GATAGCCTGC ATGATATGCT CAAGACACAT TGTTTATGTA TGAAATTGCC
  AAAGACTAAA TTTTATTTCA TGAAATATAC ATTAAGATCG GGCTTGGTGG TCTGAGCATT
  TAATCCCAGC ACTTGGGAGA CAGAGTTGAG ATAGTCATAA GTTCAAGTCC AGCCTGGTCT
  ACAAATTTCA GGACAGCAAT GGCTACATAA TAGACAGACC CTGCCATACA TAGATAGATA
  R
  ATAGATAGAT AGATGCATAC ATACATACAT ACATAATACA TACATGTATG TATATGACAT
  ATATGGCAGG GTCTCTCTAA TATACACACT ATATAATGTA TTAAATATAT TATCTTTAAT
  ATATTAATAA TATACACAAT ATAAATAATA AACAAGAAAC AATATGAAAT ATATAAAATA
  ATTATATATT GAATATGTTA AATATTTAAT ATATTAGTAT ATTAATATAT ATGGAGGCCT
  AACCATGAGG ATAGTTTCTT CCTGTGTTCT CTAATGGTAC AGAAACTAGC CGGGCGATGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39493895	mCV25219146	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33099573					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47746468 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	1096 bp upstream
Cimip3	ciliary microtubule inner protein 3	within coordinates
Cpgi9259	CpG island 9259	651 bp proximal
Rr339933	regulatory region 339933	732 bp proximal
Tssr144911	transcription start site region 144911	1042 bp upstream
Tssr144912	transcription start site region 144912	1058 bp upstream
Tssr144913	transcription start site region 144913	1073 bp upstream
Tssr144914	transcription start site region 144914	1104 bp upstream
Tssr144915	transcription start site region 144915	1188 bp upstream
Tssr148437	transcription start site region 148437	1677 bp downstream
Tssr148438	transcription start site region 148438	1822 bp downstream