rs33099645 SNP Detail

Summary

• ID
  rs33099645
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127546338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCCCT CCCTCCTTCC
  ATTGTCTTGG TATCTCTTCA CAGCAATAGA ATACTATGAC TTGGACTTAA ACTATCCCAG
  GAGTAGTTTT GACAACATTT CATAATAGAA TCAACAAAAA GATGGCCAGA TGCATGGGCC
  AACAATAACA AAGCGATAGA CTCCACACTT CCCACTGTCC AACAATCTTT TATTTGCTCG
  M
  GGTCATTCAG CAAATACTCA ATGGTGAAGA TCACAGACAG TTCCCAGGCT AAAGAAAAAG
  AAAAGAGAGA GAGAAATGGT GGCTTTTCAA GACATTGGGG CAATTAGTAA CCGGTAAACA
  GTGGCGAAGC TAAGCCTGCA CACACACACC CATGTCCCAG CCCCACTCCA ACATACTTCA
  GGCCCCCATC CCCACCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45236775	mCV22278186	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33099645					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127546338 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	1809 bp distal
Gm10765	predicted gene 10765	707 bp downstream
Mall	mal, T cell differentiation protein-like	within coordinates
Tssr20034	transcription start site region 20034	1997 bp downstream
Tssr26137	transcription start site region 26137	1067 bp downstream
Tssr26138	transcription start site region 26138	1249 bp downstream
Tssr26139	transcription start site region 26139	1328 bp downstream
Tssr26140	transcription start site region 26140	1351 bp downstream