rs33099868 SNP Detail

Summary

• ID
  rs33099868
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95015863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTTTTCCT CTGCCCTCCT CTTGCACAAG TTAACAAACA
  CTTGAGTTAA GTGTAAACTC AGTTGATTCT ATTTCCTAAG GTGCTCTAAA AATCAATTGA
  S
  GTAGAGATTA AAGCTATTTC AGACTCTGAA ATTGTAAGTA GGCAAAAAGG ACCTAAATGC
  ATAAGGCAGT TAAAAACAGA ATTATCTCCC TATAGTTTGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771565	NES10667968	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33099868					SNP	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771565	NES10667968	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95015863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	1441 bp distal
Gm65644	predicted gene, 65644	1690 bp downstream
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	1622 bp upstream
Rr367478	regulatory region 367478	692 bp downstream
Rr580812	regulatory region 580812	1784 bp distal
Rr580813	regulatory region 580813	1132 bp distal
Rr580814	regulatory region 580814	902 bp distal
Rr580815	regulatory region 580815	429 bp distal
Rr580816	regulatory region 580816	1980 bp proximal
Tssr34417	transcription start site region 34417	1655 bp upstream
Tssr34418	transcription start site region 34418	1630 bp upstream