rs33099870 SNP Detail

Summary

• ID
  rs33099870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95015930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGAGAT GGGATAAGAG
  AATTGATCCA TTCAAGTTTT CCTCTGCCCT CCTCTTGCAC AAGTTAACAA ACACTTGAGT
  TAAGTGTAAA CTCAGTTGAT TCTATTTCCT AAGGTGCTCT AAAAATCAAT TGAGGTAGAG
  ATTAAAGCTA TTTCAGACTC TGAAATTGTA AGTAGGCAAA AAGGACCTAA ATGCATAAGG
  Y
  AGTTAAAAAC AGAATTATCT CCCTATAGTT TGTATTTCAG TTCTGAAAGA AAAATTAAAA
  AAAAAAAACA TCTTAAGCTT CCTAGGGGCC TTTGTCTCTA CATCGCCCAG GAAATGGCCA
  CTGTCACAGC CCCACCTTGT GTTATCCGCT TATGTGTGTA ACTCCCTCAT AAGATGATAC
  TTTTTAGAGC AAAGATGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771568	NES10667970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33099870					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771568	NES10667970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95015930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	1508 bp distal
Gm65644	predicted gene, 65644	1623 bp downstream
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	1689 bp upstream
Rr367478	regulatory region 367478	759 bp downstream
Rr580812	regulatory region 580812	1851 bp distal
Rr580813	regulatory region 580813	1199 bp distal
Rr580814	regulatory region 580814	969 bp distal
Rr580815	regulatory region 580815	496 bp distal
Rr580816	regulatory region 580816	1913 bp proximal
Tssr34417	transcription start site region 34417	1722 bp upstream
Tssr34418	transcription start site region 34418	1697 bp upstream