rs33099872 SNP Detail

Summary

• ID
  rs33099872
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95016035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GGGGCCTTTG TCTCTACATC
  K
  CCCAGGAAAT GGCCACTGTC ACAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46771571	NES10667972	PERLEGEN	MM_PANEL2	f	SNP	G			T	G	T	T	T	G		T	T		T
ss135509937	ENSMUSSNP5071818	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T				T
ss320841100	CHEV_3_94912646	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs33099872					SNP	G	G	T	T	G	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771571	NES10667972	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95016035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	1613 bp distal
Gm65644	predicted gene, 65644	1518 bp downstream
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	1794 bp upstream
Rr367478	regulatory region 367478	864 bp downstream
Rr580812	regulatory region 580812	1956 bp distal
Rr580813	regulatory region 580813	1304 bp distal
Rr580814	regulatory region 580814	1074 bp distal
Rr580815	regulatory region 580815	601 bp distal
Rr580816	regulatory region 580816	1808 bp proximal
Tssr34417	transcription start site region 34417	1827 bp upstream
Tssr34418	transcription start site region 34418	1802 bp upstream