rs33100078 SNP Detail

Summary

• ID
  rs33100078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104179679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGAATAT TAAGGTTCTT CCTGGCGAAC AGGAATAAAC
  CATAGACCAT CTTCTTTCCT GGTGTGTGTA GAGCCAACTT GAGGCTTTCC TTAGGCATCA
  R
  GAATCCTCCC TGTTAGGACC TGCACTTCCA TTTGGGGGAC TGCAGCTATG AACCGAACAC
  ATGCTGCTGA GAACTCACCC TACTGTTGAC ACAAAATCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47257143	NES11407118	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33100078					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47257143	NES11407118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104179679 () rs orientation: forward

Symbol	Name	Function Class
Serpina3f	serine (or cysteine) peptidase inhibitor, clade A, member 3F	1124 bp upstream
Tssr114833	transcription start site region 114833	1092 bp upstream
Tssr114834	transcription start site region 114834	1118 bp upstream