rs33100576 SNP Detail

Summary

• ID
  rs33100576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126291088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGGCAG AGTCACTTCT
  CACCTCCTCT AACTCCAAAT CCTCTTCCTC CTCTGTGTCC GCGTGGCACT GCCCAACCAG
  GTTTCCCCAA AGTAGTGATT TCTTGCAGCT GCCAAAGGTG CAGTTGGTGG AGATGCCAGA
  GTGAGGATTC AGGGAGCCAG GGCTGGCACG TGGGCACCTT CTCCCCAGGC TGGGAAGAGG
  R
  CTAGGACTCA CCTAGGACAA TGTCCCTCTA GGGGCAGAAG CTGCCCGGGC TCTTCCTGCA
  GGAACTCCTC TGCCAAGCAG ATGATATGGG CCCTTAGGGG ACAACCAGGG TGGGGGCAGC
  ACAAGGGGCC CTCTTCATCC TGTCAAACAT GGCAGATGAG AAGTAACTTG AGAGCAACAC
  ACTGCATGCA GAGGCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47256473	NES11566856	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33100576					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47256473	NES11566856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126291088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19704	CpG island 19704	405 bp proximal
Rr400629	regulatory region 400629	1465 bp upstream
Rr655563	regulatory region 655563	848 bp distal
Rr655564	regulatory region 655564	1222 bp proximal
Rr655565	regulatory region 655565	1514 bp proximal
Rr655566	regulatory region 655566	1690 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	within coordinates