rs33100623 SNP Detail

Summary

• ID
  rs33100623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27316735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGCTCA GGGTAGCGCT
  CCGGCCAAAG TGCGGTGACC GCGGGGCATC CCGCCCGCCC GCGCGGGGCT CGGCCGCCGG
  GGCGGGGCTT CGCGCAGGCG GCCCCGGGTC CCCGCTGCGC GGCCGCACGG CCCTCCTCTT
  CCTCCTCCTC CTCTTCGGGC TACTAGCCGG CCGCCGCTCC CGCCCACGTG CGGCCAACCG
  R
  CGCTCGCGGG GCAGCGTGCG GGGTCCCTCT TTCACACACA CAAGTCCGCT CGTGCTCCGG
  CCGGGGCTCC ACGCCTCCTG CAGTCGCAGC GCTTCTCGAT CCGCCCCTCT GGGCGCCGCA
  TTCTGAGCTC CGGGCGCCCC GCTTCGGCCA CCGCTCCTGC CCCACCCGAG ACAAAGGCGC
  AGCGGGTCGC TCGCTCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45237298	mCV25260038	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33100623					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27316735 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11368	CpG island 11368			within coordinates
Rr553545	regulatory region 553545			1883 bp distal
Rr553546	regulatory region 553546			within coordinates
Rr553547	regulatory region 553547			68 bp proximal
Rr553548	regulatory region 553548			300 bp proximal
Rr553549	regulatory region 553549			1564 bp proximal
Tssr23213	transcription start site region 23213			188 bp upstream
Tssr23214	transcription start site region 23214			160 bp upstream
Tssr23215	transcription start site region 23215			110 bp upstream
Tssr23216	transcription start site region 23216			269 bp downstream
Vav2	vav 2 oncogene			mRNA-UTR
				Noncoding-Transcript-Variant